Search for our publications on Pubmed or click on the titles below:
- Identification of novel inhibitors of plant GH3 IAA-amido synthetases through molecular docking studies
Luque A#, Blanes-Mira C#, Caballero L, Martínez-Melgarejo PA, Nicolás-Albujer M, Pérez-Alfocea F, Fernández-Ballester G, Pérez-Pérez JM
Physiol. Plant. 176: e14612 (2024) - Connecting high-resolution 3D chromatin maps with cell division and cell differentiation at the root apical meristem
Caballero L, Pasternak T, Riyazuddin R, Pérez-Pérez JM
Plant Cell Rep. 43: 232 (2024) - An atlas of the tomato epigenome reveals that KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac distribution
An J, Brik Chaouche R, Pereyra-Bistraín LI, Zalzalé H, Wang Q, Huang Y, He X, Dias Lopes C, Antunez-Sanchez J, Bergounioux C, Boulogne C, Dupas C, Gillet C, Pérez-Pérez JM, Mathieu O, Bouché N, Fragkostefanakis S, Zhang Y, Zheng S, Crespi M, Mahfouz MM, Ariel F, Gutierrez-Marcos J, Raynaud C, Latrasse D, Benhamed M
Proc. Natl. Acad. Sci. USA 121: e2400737121 (2024) - Identification of new targets for glioblastoma therapy based on a DNA expression microarray
Larriba E, de Juan Romero C, García-Martínez A, Quintanar T, Rodríguez-Lescure A, Soto JL, Saceda M, Martín-Nieto J, Barberá VM
Comput. Biol. Med. 179: 108833 (2024) - Ascorbate, plant hormones and their interactions during plant responses to biotic stress
Singh K, Gupta R, Iqbal N, Kocsy G, Pérez-Pérez JM, Riyazuddin R
Physiol. Plant. 176: e14388 (2024) - Genes involved in auxin biosynthesis, transport and signalling underlie the extreme adventitious root phenotype of the tomato aer mutant
Kevei Z, Larriba E, Romero-Bosquet MD, Nicolás-Albujer M, Kurowski T, Mohareb F, Rickett D, Pérez-Pérez JM, Thompson AJ
Theor. Appl. Genet. 137: 76 (2024) - Recent advances in tomato gene editing
Larriba E, Yaroshko O, Pérez-Pérez JM
Int. J. Mol. Sci. 25: 2606 (2024) - Temporal profiling of physiological, histological, and transcriptomic dissection during auxin-induced adventitious root formation in tetraploid Robinia pseudoacacia micro-cuttings
Udin S, Munir MZ, Larriba E, Pérez-Pérez JM, Gull S, Pervaiz T, Mahmood U, Mahmood Z, Sun Y, Li Y
Planta 259:66 (2024) - Plant growth regulation in cell and tissue culture in vitro
Pasternak T, Steinmacher D
Plants 13: 227 (2024) - A new in vitro growth system for phenotypic characterization and seed propagation of Arabidopsis thaliana
Pasternak T, Pérez-Pérez JM, Ruperti B, Aleksandrova T, Palme K
J. Plant Growth Regul. 43: 652 (2024) - Regulation of early seedling establishment and root development in Arabidopsis thaliana by light and carbohydrates
Pasternak T, Kircher S, Palme K, Pérez-Pérez JM
Planta 258: 76 (2023) - Optimization of callus induction and shoot regeneration from tomato cotyledon explants
Yaroshko O, Pasternak T, Larriba E, Pérez-Pérez JM
Plants 12: 2942 (2023) - Role of reactive oxygen species in the modulation of auxin flux and root development in Arabidopsis thaliana
Pasternak T, Palme K, Pérez-Pérez JM
Plant J. 114: 83 (2023) - Mapping of the classical mutation rosette highlights a role for calcium in wound-induced rooting
Modrego A, Pasternak T, Omary M, Albacete A, Cano A, , Pérez-Pérez JM, Efroni I
Plant Cell Physiol. 64: 152 (2023) [ bioRxiv ] - Transcriptomic and hormonal analysis of the roots of maize seedlings grown hydroponically at low temperature
Friero I, Larriba E, Martínez-Melgarejo PA, Justamante MS, Alarcón MV, Albacete A, Salguero J, Pérez-Pérez JM
Plant Sci. 326: 111525 (2023) [ SSRN ] - Identification of transcriptional networks involved in de novo organ formation in tomato hypocotyl explants
Larriba E, Nicolás-Albujer M, Sánchez-García AB, Pérez-Pérez JM
Int. J. Mol. Sci. 23: 16112 (2022) - Root meristems: Don’t TOR at the TOP
Pérez-Pérez JM
Nature Plants 8: 729 (2022) - Effects of auxin (indole-3-butyric acid) on adventitious root formation in peach-based Prunus Rootstocks
Justamante MS, Mhimdi M, Molina-Pérez M, Albacete A, Moreno MA, Mataix I, Pérez-Pérez JM
Plants 11: 913 (2022) - A simple pipeline for cell cycle kinetic studies in the root apical meristem
Pasternak T, Kircher S, Pérez-Pérez JM, Palme K
J. Exp. Bot. 73: 4683 (2022) - Mitigation of calcium-related disorders in soilless production systems
Birlanga V, Acosta-Motos JR, Pérez-Pérez JM
Agronomy 12: 644 (2022) - Plant development: from cells to systems biology
de Folter S, Palme K, Pérez-Pérez JM
Front. Plant Sci. 12: 810071 (2021) - Methods of in situ quantitative root biology
Pasternak T, Pérez-Pérez JM
Plants 10: 2399 (2021) [ bioRxiv ] - Dynamic hormone gradients regulate wound-induced de novo organ formation in tomato hypocotyl explants
Larriba E#, Sánchez-García AB#, Justamante MS, Martínez-Andújar C, Albacete A, Pérez-Pérez JM
Int. J. Mol. Sci. 22: 11843 (2021) - Genome-wide high-resolution mapping of DNA methylation reveals epigenetic variation in the offspring of sexual and asexual propagation in Robinia pseudoacacia
Zhang Z, Liu J, Sun Y, Wang S, Xing X, Feng X, Pérez-Pérez JM, Li Y
Plant Cell Rep. 40: 2435 (2021) - Optimization of ROS measurement and localization in plant tissues: challenges and solutions
Pasternak T, Pérez-Pérez JM
protocols.io doi: 10.17504/protocols.io.bx49pqz6 (2021) - Tissue-specific metabolic reprogramming during wound induced de novo organ formation in tomato hypocotyl explants
Larriba E, Sánchez-García AB, Martínez-Andújar C, Albacete A, Pérez-Pérez JM
Int. J. Mol. Sci. 22: 10112 (2021) [ bioRxiv ] - Overproduction of ABA in rootstocks alleviates salinity stress in tomato roots
Martínez-Andújar C, Martínez-Pérez A, Albacete A, Martínez-Melgarejo PA, Dodd I, Thompson AJ, Ferrández-Ayela A, Pérez-Pérez JM, Gifford M, Pérez-Alfocea F
Plant Cell Environ. 44: 2966 (2021) [ Open Access file ] - An auxin‐mediated regulatory framework for wound‐induced adventitious root formation in tomato shoot explants
Alaguero-Cordovilla A, Sánchez-García AB, Ibáñez S, Albacete A, Cano A, Acosta M, Pérez-Pérez JM
Plant Cell Environ. 44: 1642 (2021) [ Open Access file ] - Genotype-dependent tipburn severity during lettuce hydroponic culture is associated with altered nutrient leaf content
Birlanga V, Acosta-Motos JR, Pérez-Pérez JM
Agronomy 11: 616 (2021) - Understanding of adventitious root formation: what can we learn from comparative genetics?
Mhimdi M, Pérez-Pérez JM
Front. Plant Sci. 11: 582020 (2020) - A quick protocol for the identification and characterization of early growth mutants in tomato
Alaguero-Cordovilla A, Gran-Gómez FJ, Jadczak P, Mhimdi M, Ibáñez S, Bres C, Just D, Rothan C, Pérez-Pérez JM
Plant Sci. 301: 110673 (2020) [ Open Access file ] - Anchor root development: a world within worlds
Pérez-Pérez JM
Mol. Plant 8: 1105 (2020) - Advances in plant regeneration: shake, rattle and roll
Ibáñez S, Carneros E, Testillano PS, Pérez-Pérez JM
Plants 9: 897 (2020) - Impact of overexpression of 9-cis-epoxycarotenoid dioxygenase on growth and gene expression under salinity stress
Martínez-Andújar C, Martínez-Pérez A, Ferrández-Ayela A, Albacete A, Martínez-Melgarejo PA, Dodd IC, Thompson AJ, Pérez-Pérez JM, Pérez-Alfocea F
Plant Sci. 295: 110268 (2020) - Integrated analysis of the physiology, RNA, and microRNA involved in black locust (Robinia pseudoacacia) rejuvenation
Zhang Z, Sun Y, Han C, Dong L, Guo Q, Li X, Cao S, Ud Din S, Munir Z, Pérez-Pérez JM, Li Y
Research Square doi: 10.21203/rs.2.10375/v1 (2019) - Integration of phenotype and hormone data during adventitious rooting in carnation (Dianthus caryophyllus L.) stem cuttings
Justamante MS, Acosta-Motos JR, Cano A, Villanova J, Birlanga V, Albacete A, Cano EA, Acosta M, Pérez-Pérez JM
Plants 8: 226 (2019) - A network-guided genetic approach to identify novel regulators of adventitious root formation in Arabidopsis thaliana
Ibáñez S, Ruiz-Cano H, Fernández MA, Sánchez-García AB, Villanova J, Micol, JL, Pérez-Pérez JM
Front. Plant Sci. 10: 461 (2019) - A genome-wide association study identifies new loci required for wound-induced lateral root formation in Arabidopsis thaliana
Justamante MS, Ibáñez S, Peidró A, Pérez-Pérez JM
Front. Plant Sci. 10: 311 (2019) - Molecular and physiological control of adventitious rooting in cuttings: phytohormone action meets resource allocation
Druege U, Hilo A#, Pérez-Pérez JM#, Klopotek Y, Acosta M, Shahinnia F, Zerche S, Franken P, Hajirezaei M
Ann. Bot. 123: 929 (2019) - Morphological characterization of root system architectural traits in diverse tomato genotypes during early growth
Alaguero-Cordovilla A, Gran-Gómez FJ, Tormos-Moltó S, Pérez-Pérez JM
Int. J. Mol. Sci. 19: 3888 (2018) - INCURVATA11 and CUPULIFORMIS2 are redundant genes that encode epigenetic machinery components in Arabidopsis
Mateo-Bonmatí E, Esteve-Bruna D, Juan-Vicente L, Nadi R, Candela H, Lozano FM, Ponce MR, Pérez-Pérez JM, Micol JL
Plant Cell 30: 1596 (2018) - A comprehensive phylogeny of auxin homeostasis genes involved in adventitious root formation in carnation stem cuttings
Sánchez-García AB, Ibáñez S, Cano A, Acosta M, Pérez-Pérez JM
PLoS One 13: e0196663 (2018) - Enhanced conjugation of auxin by GH3 enzymes leads to poor adventitious rooting in carnation stem cuttings
Cano A, Sánchez-García AB, Albacete A, González-Bayón R, Justamante MS, Ibáñez S, Acosta M, Pérez-Pérez JM
Front. Plant Sci. 9: 566 (2018) - Regulation of hormonal control, cell reprograming and patterning during de novo root organogenesis
Bustillo-Avendaño E, Ibáñez S, Sanz O, Barros JAS, Gude I, Perianez-Rodriguez J, Micol JL, Del Pozo JC, Moreno-Risueño MA, Pérez-Pérez JM
Plant Physiol. 176: 1709 (2018) - Deficient glutamate biosynthesis triggers a concerted upregulation of ribosomal protein genes in Arabidopsis
Muñoz-Nortes T, Pérez-Pérez JM, Sarmiento-Mañús R, Candela H, Micol JL
Sci. Rep. 7: 6164 (2017) - Vegetative propagation of argan tree (Argania spinosa (L.) Skeels) using in vitro germinated seeds and stem cuttings
Justamante MS, Ibáñez S, Villanova J, Pérez-Pérez JM
Sci. Hort. 225: 81 (2017) [Open Access file] - The ANGULATA7 gene encodes a DnaJ-like zinc finger-domain protein involved in chloroplast function and leaf development in Arabidopsis
Muñoz-Nortes T, Pérez-Pérez JM, Ponce MR, Candela H, Micol JL
Plant J. 89: 870 (2017) [Open Access file] [Supplementary data] - Multiple factors influence adventitious rooting in carnation (Dianthus caryophyllus L.) stem cuttings
Villanova J, Cano A, Albacete A, López A, Cano EA, Acosta M, Pérez-Pérez JM
Plant Growth Regul. 81: 511 (2017) [Open Access file] - Root-to-shoot hormonal communication in contrasting rootstocks suggests an important role for the ethylene precursor aminocyclopropane-1-carboxylic acid in mediating plant growth under low-potassium nutrition in tomato
Martínez-Andújar C, Albacete A, Martínez-Pérez A, Pérez-Pérez JM, Asíns MJ, Pérez-Alfocea F
Front. Plant Sci. 7: 1782 (2016) - Wound signaling of regenerative cell reprogramming
Lup SD, Tian X, Xu J, Pérez-Pérez JM
Plant Science 250: 178 (2016) [Open Access file] - Identification of novel stress-responsive biomarkers from gene expression datasets in tomato roots
Ferrández-Ayela A, Sánchez-García AB, Martínez-Andújar C, Kevei Z, Gifford ML, Thompson AJ, Pérez-Alfocea F, Pérez-Pérez JM
Funct. Plant Biol. 43: 783 (2016) [Open Access file] [Supplementary data] - TOPOISOMERASE1α acts through two distinct mechanisms to regulate stele and columella stem cell maintenance in the Arabidopsis root
Zhang Y, Zheng L, Hong JH, Gong X, Zhou C, Perez-Perez JM, Xu J
Plant Physiol. 171: 483 (2016) [Open Access file] - Gene expression profiling during adventitious root formation in carnation stem cuttings
Villacorta-Martín C, Sánchez-García AB, Villanova J, Cano A, van de Rhee M, de Haan J, Acosta M, Passarinho P, Pérez-Pérez JM
BMC Genomics 16: 789 (2015) - Quantitative analysis of adventitious root growth phenotypes in carnation stem cuttings
Birlanga V, Villanova J, Cano A, Cano EA, Acosta M, Pérez-Pérez JM
PLoS One 10: e0133123 (2015) - Leaf phenomics: a systematic reverse genetic screen for Arabidopsis leaf mutants
Wilson-Sánchez D, Rubio-Díaz S, Muñoz-Viana R, Pérez-Pérez JM, Jover-Gil S, Ponce MR, Micol JL
Plant J. 79: 878 (2014) - Adventitious root development in ornamental plants: insights from carnation stem cuttings
Cano E, Pérez-Pérez JM, Acosta M
Soil Biology Series: Root engineering 40: 423 (2014) [Open Access file] - Early steps of adventitious rooting: morphology, hormonal profiling and carbohydrate turnover in carnation stem cuttings
Agulló-Antón MA, Ferrández-Ayela A, Fernández-García N, Nicolás C, Albacete A, Pérez-Alfocea F, Sánchez-Bravo J, Pérez-Pérez JM#, Acosta M#
Phisiol. Plant. 150: 446 (2014) [Open Access file] - A quantitative framework for flower phenotyping in cultivated carnation (Dianthus caryophyllus L.)
Chacón B, Ballester R, Birlanga V, Rolland-Lagan AG, Pérez-Pérez JM
PLoS One 8: e82165 (2013) - RETINOBLASTOMA-RELATED protein stimulates cell differentiation in the Arabidopsis root meristem by interacting with cytokinin signaling
Perilli S#, Pérez-Pérez JM#, Di Mambro R, Peris CL, Díaz-Triviño S, Del Bianco M, Pierdonati E, Moubayidin L, Cruz-Ramírez A, Costantino P, Scheres B, Sabatini S
Plant Cell 25: 4469 (2013) - Arabidopsis TRANSCURVATA1 encodes NUP58, a component of the nucleopore central channel
Ferrández-Ayela A, Alonso-Peral MM, Sánchez-García AB, Micol-Ponce R, Pérez-Pérez JM, Micol JL, Ponce MR
PLoS One 8: e67661 (2013) - Functional redundancy and divergence within the Arabidopsis RETICULATA-RELATED gene family
Pérez-Pérez JM, Esteve-Bruna D, González-Bayón R, Kangasjärvi S, Caldana C, Hannah MA, Willmitzer L, Ponce MR, Micol JL
Plant Physiol. 175: 589 (2013) - Evaluation of ploidy level and endoreduplication in carnation (Dianthus spp.)
Agulló-Antón MA, Olmos E, Pérez-Pérez JM, Acosta M
Plant Science 201: 1 (2013) [Open Access file] - incurvata13, a novel allele of AUXIN RESISTANT6, reveals a specific role for auxin and the SCF complex in Arabidopsis embryogenesis, vascular specification and leaf flatness
Esteve-Bruna D, Pérez-Pérez JM, Ponce MR, Micol JL
Plant Physiol. 175: 1303 (2013) - Cell expansion-mediated organ growth is affected by mutations in three EXIGUA genes
Rubio-Díaz S#, Pérez-Pérez JM#, González-Bayón R, Muñoz-Viana R, Borrega N, Mouille G, Hernández-Romero D, Robles P, Höfte H, Ponce MR, Micol JL
PLoS One 7: e36500 (2012) - Whole organ, venation and epidermal cell morphological variations are correlated in the leaves of Arabidopsis mutants
Pérez-Pérez JM, Rubio-Díaz S, Dhondt S, Hernández-Romero D, Sánchez-Soriano J, Beemster GT, Ponce MR, Micol JL
Plant Cell Environ. 34: 2200 (2011) - Uncovering the post-embryonic functions of gametophytic- and embryonic-lethal genes
Candela H, Pérez-Pérez JM, Micol JL
Trends Plant Sci. 16: 336 (2011) - Analysis of ven3 and ven6 reticulate mutants reveals the importance of arginine biosynthesis in Arabidopsis leaf development
Mollá-Morales A, Sarmiento-Mañús R, Robles P, Quesada V, Pérez-Pérez JM, González-Bayón R, Hannah MA, Willmitzer L, Ponce MR, Micol JL
Plant J. 65: 335 (2011) - Differential contributions of ribosomal protein genes to Arabidopsis thaliana leaf development
Horiguchi G, Mollá-Morales A, Pérez-Pérez JM, Kojima K, Robles P, Ponce MR, Micol JL, Tsukaya H
Plant J. 65: 724 (2011) - A role for AUXIN RESISTANT3 in the coordination of leaf growth
Pérez-Pérez JM, Candela H, Robles P, López-Torrejón G, del Pozo JC, Micol JL
Plant Cell Physiol. 51: 1661 (2010) - QTL analysis of leaf architecture
Pérez-Pérez JM, Esteve-Bruna D, Micol JL
J. Plant Res. 123: 15 (2010) - Understanding synergy in genetic interactions
Pérez-Pérez JM, Candela H, Micol JL
Trends Genet. 2009 25: 368 (2009) - Lessons from a search for leaf mutants in Arabidopsis thaliana
Pérez-Pérez JM, Candela H, Robles P, Quesada V, Ponce MR, Micol JL
Int. J. Dev. Biol. 53: 1623 (2009) - Specialization of CDC27 function in the Arabidopsis thaliana anaphase-promoting complex (APC/C)
Pérez-Pérez JM, Serralbo O, Vanstraelen M, González C, Criqui MC, Genschik P, Kondorosi E, Scheres B
Plant J. 53: 78 (2008) - Hormone signalling and root development: an update on the latest Arabidopsis thaliana research
Pérez-Pérez JM
Funct. Plant Biol. 34: 163 (2007) - Non-cell-autonomous rescue of anaphase-promoting complex function revealed by mosaic analysis of HOBBIT, an Arabidopsis CDC27 homolog
Serralbo O#, Pérez-Pérez JM#, Heidstra R, Scheres B
Proc. Natl. Acad. Sci. USA 103: 13250 (2006) - The RETINOBLASTOMA-RELATED gene regulates stem cell maintenance in Arabidopsis roots
Wildwater M, Campilho A#, Perez-Perez JM#, Heidstra R, Blilou I, Korthout H, Chatterjee J, Mariconti L, Gruissem W, Scheres B
Cell 123: 1337 (2005) - Quantitative trait loci mapping of floral and leaf morphology traits in Arabidopsis thaliana: evidence for modular genetic architecture
Juenger T, Pérez-Pérez JM, Bernal S, Micol JL
Evol. Dev. 7: 259 (2005) - The ULTRACURVATA2 gene of Arabidopsis encodes an FK506-binding protein involved in auxin and brassinosteroid signaling
Pérez-Pérez JM, Ponce MR, Micol JL
Plant Physiol. 134: 101 (2004) - Genetic analysis of natural variations in the architecture of Arabidopsis thaliana vegetative leaves
Pérez-Pérez JM, Serrano-Cartagena J, Micol JL
Genetics 162: 893 (2002) - The UCU1 Arabidopsis gene encodes a SHAGGY/GSK3-like kinase required for cell expansion along the proximodistal axis
Pérez-Pérez JM, Ponce MR, Micol JL
Dev. Biol. 242: 161 (2002) - ULTRACURVATA1, a SHAGGY-like Arabidopsis gene required for cell elongation
Pérez-Pérez JM, Ponce MR, Micol JL
Int. J. Dev. Biol. 45: S51 (2001) - Mutations in the ULTRACURVATA2 gene of Arabidopsis thaliana, which encodes a FKBP-like protein, cause dwarfism, leaf epinasty and helical rotation of several organs
Pérez-Pérez JM, Ponce MR, Micol JL
Int. J. Dev. Biol. 45: S49 (2001) - Genetic architecture of leaf morphogenesis in Arabidopsis thaliana
Robles P, Pérez-Pérez JM, Candela H, Quesada V, Barrero JM, Jover-Gil S, Ponce MR, Micol JL
Int. J. Dev. Biol. 45: S61 (2001) - Genetic and molecular analysis of INCURVATA2, a negative regulator of floral homeotic genes in the leaves of Arabidopsis thaliana
Ponce MR, Barrero JM, Candela H, Robles P, Pérez-Pérez JM, Piqueras P, Martínez-Laborda A, Micol JL
Int. J. Dev. Biol. 45: S53 (2001) - Genetic analysis of incurvata mutants reveals three independent genetic operations at work in Arabidopsis leaf morphogenesis
Serrano-Cartagena J, Candela H, Robles P, Ponce MR, Pérez-Pérez JM, Piqueras P, Micol JL
Genetics 156: 1363 (2000) - A multiplex reverse transcriptase-polymerase chain reaction method for fluorescence-based semiautomated detection of gene expression in Arabidopsis thaliana
Ponce MR, Pérez-Pérez JM, Piqueras P, Micol JL
Planta 211: 606 (2000)
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